rs224347378 SNP Detail

Summary

• ID
  rs224347378
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127484856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTAAG ATTTTCTCAT
  TGTTGGTTTT TGTGTTATTT TGCCACACTG GGTCTAGATT TGTCTCGCTT CTAGATCTAC
  TTGATCCTTC TGTAAATCCT CTCATTCTTG CGTGTATGTG TTTTTTTATT TTTAAATGCT
  CTTTTAGTTT TCAGACTTCT CCTTCACATT TGCATCTCCC TTCTTAATTC TCAGGATGTT
  M
  TTTACATTTA GTGCTCAGCT GTGTCATTCC CTCCTGCTGT TGGAGCTGTT GCAGGAACAC
  AGGAAATGAG GTCAGGGTTG GAGCACCTAG GGAGTCTGCA TCTTCCGTTC CAGGCTGTTA
  CCAGTTACAC AGCAAGGGGC ACAGTAGGGA CATAATGTCA GCTGGTCCCT GGGGGCACAG
  CAAGCACATG ATGTCAGCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320956115	CHEV_3_127394125	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224347378					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127484856 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Gm16238	predicted gene 16238	728 bp downstream
Tssr35587	transcription start site region 35587	424 bp upstream
Tssr35588	transcription start site region 35588	84 bp downstream
Tssr35589	transcription start site region 35589	1339 bp downstream