rs224371380 SNP Detail

Summary

• ID
  rs224371380
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143580327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTTTTTG TTATATAAAT TCCCTTAAAT
  TGTCCCTCTC ATGTTAAGTC AAGAAGGTCA AAATCTAATA AAAGATAATA GTAGTTGTAG
  AACTAAAGAT TCGGGAAAGT AACTAAAAAT TATATTCAAA ATAGTTTTAT Tgctgggcag
  W
  ggtggcgcat gcctttaatc ccagaacttg ggaggcagag gcaggcggat ttctgagttc
  aagaccagcc tggtctacac agtgagttcc aggacaccca gggctacaca gagaaacccc
  tgtcttgaaa aaaacaaaCA AACAAAAAAA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320010266	CHEV_1_145551719	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224371380					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143580327 () rs orientation: forward

Symbol	Name	Function Class
Cdc73	cell division cycle 73, Paf1/RNA polymerase II complex component	1696 bp upstream
Cpgi835	CpG island 835	1101 bp distal
Gm69373	predicted gene, 69373	596 bp upstream
Rr419928	regulatory region 419928	1206 bp distal
Rr419929	regulatory region 419929	1656 bp distal
Tssr14091	transcription start site region 14091	1792 bp upstream
Tssr14092	transcription start site region 14092	1760 bp upstream
Tssr14093	transcription start site region 14093	1742 bp upstream