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rs224378764 SNP Detail
Summary
  • ID
    rs224378764
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:142131335 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTGACCCCAT CTTGCCCTGT
TTGACCCCAG CCTAGAATGC TTCTGTTCTT GCTGGATCCC ATGGTCTCTG CCACTGTCTC
CAAGGACTCC TATCACCTCC CTGGAGGCAG CGGCCTCAGT CTTTACTGGC AACCCTGCAC
CTCTTCTTTC TTCTCTCTAA GAGCTCTTTC CACCTGGGGT CGCCAATGGT CCCCCAGCCT
Y
CTTCTGTCTC GGCTCCCCCC GAGACGATGT CTCCTTTGCT AACTATCCTG CCTTTCTATG
TGCCATTCTG CTGCGAGGCC AGCCGCTTCT TCTCACCAGG CCCCCTCTCT AAACCTTCGT
TTAGAAGGTC AGTGGAGCGA GGCCAAGAGA GAAGAAGGAG ACTCACCTGC CCAGCAGACG
GCGGTCCTCA CCTGCCCACT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373453172 MGP_WTSI_7_149763503 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224378764 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss373453172 MGP_WTSI_7_149763503 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:142131335 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm56420 predicted gene, 56420 675 bp downstream
Gm56421 predicted gene, 56421 251 bp upstream
H19 H19, imprinted maternally expressed transcript within coordinates
Mir675 microRNA 675 451 bp upstream
Rr658231 regulatory region 658231 537 bp proximal
Rr658232 regulatory region 658232 1661 bp proximal
Tssr2460 transcription start site region 2460 338 bp downstream
Tssr2461 transcription start site region 2461 313 bp upstream
Tssr70213 transcription start site region 70213 1527 bp downstream
Tssr70214 transcription start site region 70214 945 bp downstream
Tssr70215 transcription start site region 70215 622 bp downstream
Tssr70216 transcription start site region 70216 558 bp downstream
Tssr70217 transcription start site region 70217 541 bp downstream
Tssr70218 transcription start site region 70218 191 bp downstream
Tssr70219 transcription start site region 70219 153 bp downstream
Tssr70220 transcription start site region 70220 41 bp downstream
Tssr70221 transcription start site region 70221 2 bp downstream
Tssr70222 transcription start site region 70222 3 bp upstream
Tssr70223 transcription start site region 70223 175 bp upstream
Tssr70224 transcription start site region 70224 232 bp upstream
Tssr70225 transcription start site region 70225 270 bp upstream
Tssr70226 transcription start site region 70226 367 bp upstream
Tssr70227 transcription start site region 70227 439 bp upstream
Tssr70228 transcription start site region 70228 462 bp upstream
Tssr75814 transcription start site region 75814 1969 bp upstream
Tssr75815 transcription start site region 75815 1805 bp upstream
Tssr75816 transcription start site region 75816 1744 bp upstream
Tssr75817 transcription start site region 75817 1581 bp upstream
Tssr75818 transcription start site region 75818 1505 bp upstream
Tssr75819 transcription start site region 75819 1335 bp upstream
Tssr75820 transcription start site region 75820 1284 bp upstream
Tssr75821 transcription start site region 75821 1271 bp upstream
Tssr75822 transcription start site region 75822 1110 bp upstream
Tssr75823 transcription start site region 75823 1067 bp upstream
Tssr75824 transcription start site region 75824 1034 bp upstream
Tssr75825 transcription start site region 75825 910 bp upstream
Tssr75826 transcription start site region 75826 862 bp upstream
Tssr75827 transcription start site region 75827 842 bp upstream
Tssr75828 transcription start site region 75828 710 bp upstream
Tssr75829 transcription start site region 75829 220 bp upstream
Tssr75830 transcription start site region 75830 193 bp upstream
Tssr75831 transcription start site region 75831 172 bp upstream
Tssr75832 transcription start site region 75832 106 bp upstream
Tssr75833 transcription start site region 75833 29 bp upstream
Tssr75834 transcription start site region 75834 232 bp downstream
Tssr75835 transcription start site region 75835 268 bp downstream
Tssr75836 transcription start site region 75836 290 bp downstream
Tssr75837 transcription start site region 75837 310 bp downstream
Tssr75838 transcription start site region 75838 387 bp downstream
Tssr75839 transcription start site region 75839 400 bp downstream
Tssr75840 transcription start site region 75840 442 bp downstream
Tssr75841 transcription start site region 75841 444 bp downstream
Tssr75842 transcription start site region 75842 481 bp downstream
Tssr75843 transcription start site region 75843 488 bp downstream
Tssr75844 transcription start site region 75844 495 bp downstream
Tssr75845 transcription start site region 75845 541 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory