rs224380382 SNP Detail

Summary

• ID
  rs224380382
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32420415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCTTGTT CTGCCGGCTT
  GTACCTTCTG CATGTGAATA CTTGTATAGT GGCTAGGGGT TTCTCCTTGG ATAACATGAC
  ACGAATTTTC CATATTACCG GCAGAGTATG GTTTCGCAGC ATCAAGTACT TTCACATTGT
  GTGTGGTTAT TGTGTAAACC ATAAACTAAA ATGCCAAGAT CTAAATATGG TGAGCCTCAA
  Y
  TCAGCCTAAT AGACTGCCTA TTTACACGGG AATGCAAGGC TATGACTGGA GCATGCGCCA
  ACAACCAGGT ACGGGCGGGC TTCGCGAATT CGAGGACTGT TCAGCAGACT AGACCAGTGT
  GCACCCGCCA TCGGGAAGAG TAATCCACCG CACAGATGAG TTCAGTGCAC GTGCTGTATA
  TGTGAAAATA CCAAATGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357463393	MGP_WTSI_3_32265188	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224380382					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357463393	MGP_WTSI_3_32265188	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32420415 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	within coordinates
Cpgi13055	CpG island 13055	within coordinates
Rr77496	regulatory region 77496	within coordinates
Rr374783	regulatory region 374783	330 bp downstream
Tssr28742	transcription start site region 28742	1862 bp downstream
Tssr28743	transcription start site region 28743	1338 bp downstream
Tssr28744	transcription start site region 28744	940 bp downstream
Tssr28745	transcription start site region 28745	913 bp downstream
Tssr32923	transcription start site region 32923	1111 bp upstream
Tssr32924	transcription start site region 32924	1048 bp upstream
Tssr32925	transcription start site region 32925	840 bp upstream
Tssr32926	transcription start site region 32926	644 bp upstream
Tssr32927	transcription start site region 32927	575 bp upstream
Tssr32928	transcription start site region 32928	353 bp upstream
Zmat3	zinc finger matrin type 3	601 bp upstream