rs224388024 SNP Detail

Summary

• ID
  rs224388024
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164752854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACCCA GGCCGCTCTC
  AGAAGGCTCC TCAGGCTGGC CGGGCCGAGG GGCCGCGTCG CTACTGCTCT CCACCTCGTT
  CTCCTCCATT GGTTCTGGGG ACCGACTGAC AGCGAAGCGC GGGGTTTGAG GCTTTCACTC
  TGCTGGGCGA TACGACCATG GTTGCAACAA GTGGTCCACC TTTCGGGCCC GGCCAAGCAG
  W
  ACCCACCCAG ATGCACCGGT GTGCCCATTC TGCAGATGCA AAGACTGAGC ATCGGACTAG
  ATGGGACGGG GTTTCCTGGA AAGGGAACCT TCCAGAAAAG AATAGGGACG CCTGGCCTCT
  CAGGCTAGGA CCCTTTGGGA AGAAGGGTGG TCCCGGTGGG TGATCACGGC TCCTTGCTCC
  TCCCAGAGGC ATGAATCGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356443487	MGP_WTSI_2_164736434	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224388024					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356443487	MGP_WTSI_2_164736434	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164752854 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2210414I22Rik	RIKEN cDNA 2210414I22 gene			956 bp upstream
Cpgi12677	CpG island 12677			within coordinates
Rr367365	regulatory region 367365			within coordinates
Rr569758	regulatory region 569758			1268 bp distal
Rr569759	regulatory region 569759			1160 bp distal
Rr569760	regulatory region 569760			818 bp distal
Rr569761	regulatory region 569761			within coordinates
Rr569762	regulatory region 569762			394 bp proximal
Rr569763	regulatory region 569763			461 bp proximal
Rr569764	regulatory region 569764			775 bp proximal
Rr569765	regulatory region 569765			813 bp proximal
Rr569766	regulatory region 569766			963 bp proximal
Tssr21686	transcription start site region 21686			493 bp upstream
Tssr27593	transcription start site region 27593			241 bp downstream
Tssr27594	transcription start site region 27594			284 bp downstream
Tssr27595	transcription start site region 27595			324 bp downstream
Tssr27596	transcription start site region 27596			626 bp downstream
Tssr27597	transcription start site region 27597			652 bp downstream
Zfp335	zinc finger protein 335			Intron
				mRNA-UTR
Zfp335os	zinc finger protein 335, opposite strand			499 bp upstream