rs224400027 SNP Detail

Summary

• ID
  rs224400027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148990620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA CTGGGGTTTG ATACTGGCTG
  Y
  TCTCAGAAAA TGTTTGGGGG GGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321720086	CHEV_5_149865386	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224400027					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148990620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17090	CpG island 17090	151 bp distal
D5Mit287	DNA segment, Chr 5, Massachusetts Institute of Technology 287	49 bp proximal
Hmgb1	high mobility group box 1	753 bp upstream
Rr124812	regulatory region 124812	within coordinates
Rr378801	regulatory region 378801	1794 bp downstream
Rr399531	regulatory region 399531	499 bp downstream
Tssr1757	transcription start site region 1757	580 bp downstream
Tssr49872	transcription start site region 49872	601 bp downstream
Tssr54619	transcription start site region 54619	1831 bp upstream
Tssr54620	transcription start site region 54620	757 bp upstream
Tssr54621	transcription start site region 54621	739 bp upstream