rs224409442 SNP Detail

Summary

• ID
  rs224409442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156938536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCCCAACT CAGGATGGGG AAGAACCCTC ATGTGGACTG
  TGGCTCTCAG CCAGCCTCCT TATGGCTTGA AAACCCAAGA ACAGGGGCAG CCACTGCTCT
  Y
  CAGCAGAGCT GATTATAAGG TGTGAAAGAC ATTGACTGAA GAAGCATACA ATTTGTCTTT
  ATGGGATTTG ACAATCCCTA GAAGATCAAA AAACAAAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584142	CHEV_2_156922352	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224409442					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156938536 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	939 bp distal
Rr568432	regulatory region 568432	1382 bp distal
Samhd1	SAM domain and HD domain, 1	918 bp downstream
Tldc2	TBC/LysM associated domain containing 2	134 bp downstream
Tssr27104	transcription start site region 27104	1842 bp downstream
Tssr27105	transcription start site region 27105	1887 bp downstream
Tssr27106	transcription start site region 27106	1976 bp downstream