rs224411172 SNP Detail

Summary

• ID
  rs224411172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48531128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTTCCGC CTTCGATTTA
  AAAATTTGGC GCGGAAAGCG GGACCGTAGC TGGCACCGCC CCCGAGTGCG CGGGGCTGGA
  GCGCGGGCGA GCCCCTCCCC CGCCCTCTGC GCGGGAGCTC GGCTCCTCCC CACGGGCCCC
  GGCGGGGCGG GAGGCGGGAA ACGGCCGCCT TCACCCTGGC CTTCCCGGGA TCCCACAACC
  Y
  CGCCGCAGCA GTCTGCTCCC CGCTCACCTG TCAATCCTCC TTCAGAGCTG ACGGTCCGGG
  GTGGCCCCGA ATCCTGGCTG CGCGTCTCAG GGAGCCAGCG CGTCTCAGGG AGACTCGCTT
  AGCCCCGCCG CGCAGAGGTG GGTGCCGGGG GCGCCACCGG GGCCGGGGCT GGGGGGGGCC
  GGCGGGCGGG CCGCGGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371266121	MGP_WTSI_7_56136750	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224411172					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371266121	MGP_WTSI_7_56136750	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48531128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19137	CpG island 19137	within coordinates
E2f8	E2F transcription factor 8	Intron
Gm2788	predicted gene 2788	within coordinates
Rr400335	regulatory region 400335	133 bp downstream
Rr400336	regulatory region 400336	269 bp upstream
Rr646935	regulatory region 646935	2000 bp distal
Rr646936	regulatory region 646936	1493 bp distal
Rr646937	regulatory region 646937	350 bp distal
Rr646938	regulatory region 646938	within coordinates
Rr646939	regulatory region 646939	5 bp proximal
Rr646940	regulatory region 646940	206 bp proximal
Tssr66768	transcription start site region 66768	15 bp downstream
Tssr66769	transcription start site region 66769	484 bp upstream
Tssr72630	transcription start site region 72630	390 bp upstream
Tssr72631	transcription start site region 72631	350 bp upstream
Tssr72632	transcription start site region 72632	330 bp upstream
Tssr72633	transcription start site region 72633	224 bp downstream
Tssr72634	transcription start site region 72634	261 bp downstream
Tssr72635	transcription start site region 72635	971 bp downstream
Tssr72636	transcription start site region 72636	1955 bp downstream