rs224411803 SNP Detail

Summary

• ID
  rs224411803
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147216828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTAATTTT GAAGAACAAA CTGCTTCAGG
  GTGGTGAGGT TCATTTTGGT TTCTGGTTTG CAAAGAATTG GGGTGGGCAA AAACCCAGGA
  ACCCAGAAGG CTTCTTCTGG AGCTAGGCAA GAGGGCTATT AAATGATTTC AAGTTAAGGC
  R
  CACTGGTGGT GGGGACTCTG AGCATAATTC AATTGTTGTA GTCATAAACA TATTACTGGT
  GAGAGTCTGA CTTCACCTGT TAAACATGGC TGCCTTTGAA TAAAGGAAAG TCTGAAACTC
  GCCAGCTTGG TGAGGGAGAA AGTCTGTGTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320550013	CHEV_2_147200644	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224411803					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147216828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12389	CpG island 12389	1011 bp distal
Pax1	paired box 1	within coordinates
Tssr20631	transcription start site region 20631	1045 bp downstream
Tssr20632	transcription start site region 20632	989 bp downstream
Tssr20633	transcription start site region 20633	953 bp downstream
Tssr20634	transcription start site region 20634	860 bp downstream
Tssr20635	transcription start site region 20635	620 bp upstream