rs224419096 SNP Detail

Summary

• ID
  rs224419096
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35503849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGTTTCC GTGAAGTATC
  TGCTCTGCTG TAACAAACCC TGTTGGGTCC TGTGCTAATA CCATGAATAC AAACTGAGAG
  AAGCAATCTC ACCCAGCTTT CAACCCAAGA ATAAGCCGGC AGGTAGGGGC TAGCAGGAAT
  GGCAGAGCCA CGAGCTTGGG TCTGGATTCA ATGGGTGGGC GTGGCCAGAG GAAGGACTTT
  W
  GGGAGGATCG TAGTGATAGC GCCAGGCTGG CCTTGTTAGG TGAGATACCT TTTGGATGTT
  TCCTGGTATA TTTAGAACCC ACTTCAAGCA GGTTGGGTTT TGAGTCGTCA AAATACATAC
  GAAAAAGTAA TGGTTTAGGT ACGGCAGCCA TCTTATTTGC TGTGTCTCTG GATAAAAGTT
  TACCAGCTGG GGGGTTACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370986860	MGP_WTSI_7_36589443	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	T	A	T	A	A	T	T	T	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224419096					SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	T	A	T	A	A	T	T	T	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370986860	MGP_WTSI_7_36589443	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35503849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18877	CpG island 18877	1183 bp distal
E130304I02Rik	RIKEN cDNA E130304I02 gene	within coordinates
Rr645475	regulatory region 645475	1822 bp distal
Rr645476	regulatory region 645476	1446 bp distal
Rr645477	regulatory region 645477	945 bp distal
Tssr72060	transcription start site region 72060	1417 bp upstream
Zfp507	zinc finger protein 507	1421 bp upstream