rs224420726 SNP Detail

Summary

• ID
  rs224420726
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128657725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCGCGCT GTCCCCAATC
  ATTGGTTGGT TACGCAATGG AGACGTACAA TTGGTCGCCT TTTCTCTCGT TAGGCCATGC
  AAACCCCGCC CTCCCCTGGA TCCACCTTTT TAGAGAGCCG TGGAAAGTGG CCAAGAGGCG
  TGAGAGCGCC GCCGCCGCTG ACTAATGGGA AGAGCCGTTG GTGTGAGGTG GGAGCAAGAG
  W
  AACAGCGATT GGTTGGATGA GCCTAAGCGC CTGAGGTGGG GGCCAGCGGT GGGGGTCCGG
  TGGACTGAGG CGCATCAAGA TGGCGGCCGA GACGGTGGAG CTCCACAAGC TGAAGGTACC
  GTTACGCGGG GAAGGCTGAG GTGGGGTTTC CTGGAGCCTA AATTCTACGC GGGGCCCTGC
  GCGGCCTTAT TCCACGTGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536212	CHEV_10_128258912	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224420726					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128657725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	within coordinates
Ormdl2	ORM1-like 2 (S. cerevisiae)	227 bp upstream
Rr402366	regulatory region 402366	34 bp downstream
Rr441331	regulatory region 441331	276 bp distal
Rr441332	regulatory region 441332	within coordinates
Rr441333	regulatory region 441333	52 bp proximal
Rr441334	regulatory region 441334	69 bp proximal
Rr441335	regulatory region 441335	387 bp proximal
Rr441336	regulatory region 441336	1442 bp proximal
Sarnp	SAP domain containing ribonucleoprotein	within coordinates
Tssr96458	transcription start site region 96458	119 bp downstream
Tssr96459	transcription start site region 96459	83 bp downstream
Tssr96460	transcription start site region 96460	56 bp downstream
Tssr96461	transcription start site region 96461	31 bp upstream
Tssr99967	transcription start site region 99967	224 bp upstream