rs224424213 SNP Detail

Summary

• ID
  rs224424213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:88825328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGAAAG GTTACGTTCT
  GATAAGTTAC CTTTGAGACA TTTAAGATGG TTGGGCTTAA ACTTTGGCTT GTTTACTCTG
  GACTCCTTTT AGATTTAAGA AAACCAGGTA TTTCACAAAT GAAAACATAT TTCTGTCCAA
  GAAGGAAAGA ATAGAAAACC TGACCGGCTT GTTCCTTTTA TACCCGAGAT GTGTAGAAGA
  R
  GTTCTTCCTC TTTTCTTCGG TGAGACACAA ACCCTAAAGC AGTGGCTGGC AACCTTCCGA
  ATGCTACATC TTTACAACAG CTCATCTTGT GGTGCGCCCC CCCCCCAACC ATAAAAGTAT
  TTTCATTGCT ACTTCATAAT TGCAATTTTG CTGCTGTTGT GAATTGTAAA TATCTGTCTT
  TTTTCCATGG TCTTAGTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365796676	MGP_WTSI_5_89106494	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224424213					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365796676	MGP_WTSI_5_89106494	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88825328 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16030	CpG island 16030	979 bp distal
Gm71600	predicted gene, 71600	within coordinates
Grsf1	G-rich RNA sequence binding factor 1	1298 bp upstream
Rr378262	regulatory region 378262	469 bp upstream
Rr614150	regulatory region 614150	1814 bp distal
Rr614151	regulatory region 614151	1313 bp distal
Rr614152	regulatory region 614152	1491 bp distal
Rr614153	regulatory region 614153	1430 bp distal
Rr614154	regulatory region 614154	1236 bp distal
Rr614155	regulatory region 614155	206 bp distal
Rr614156	regulatory region 614156	1310 bp proximal
Tssr51690	transcription start site region 51690	1906 bp upstream
Tssr51691	transcription start site region 51691	1877 bp upstream
Tssr51692	transcription start site region 51692	1814 bp upstream
Tssr51693	transcription start site region 51693	1340 bp upstream
Tssr51694	transcription start site region 51694	1283 bp upstream
Tssr51695	transcription start site region 51695	1260 bp upstream
Tssr51696	transcription start site region 51696	1232 bp upstream