rs224430633 SNP Detail

Summary

• ID
  rs224430633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59439479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCAGGCA AATACACCCA
  TATAAGGGCT GAACTTGGGC TGCCTTAGGA AGAAACCGTT AAAATAAACT TCCTAGTCTC
  TTGTAACAAG TTTTCTTGAA GATTATTTCT GTCCAACAAA GAAAGAAGCC TGCTTTGGGA
  AGTAGTAGAG CACCATGAAA GTGTGAACAT GTCTCTAGGT GTTTGGGCAA AACCAGTCTC
  Y
  AGGAACCCTC ACAGGTCATT GCACAAATCC ACTGTTCAAG ACATTTTTAA AACAACCTTT
  ATCTCTACTT CTCATGCCCT TCTGCAAAAT AAATATGTAT ATATACTTTA AAAAAAAACA
  TGATGCATGA AAAAACAACT ATCCAAGACT TGGACATGGG AAGGAAAATT ACTGGGTGTC
  TCTTTCAGCA TGCATGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141038	CHEV_4_59452351	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224430633					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59439479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	686 bp distal
Rr101075	regulatory region 101075	78 bp distal
Susd1	sushi domain containing 1	846 bp upstream
Tssr37430	transcription start site region 37430	1304 bp downstream
Tssr37431	transcription start site region 37431	659 bp upstream
Tssr41933	transcription start site region 41933	1174 bp upstream
Tssr41934	transcription start site region 41934	1053 bp upstream
Tssr41935	transcription start site region 41935	800 bp upstream