rs224432164 SNP Detail

Summary

• ID
  rs224432164
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:29231559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCCCCGT GGTGCTGCCC
  CCTGGTGGTT AAGATGCGCA AAGACTTGTC CTTTGCTCCT CCCCCATTAC ACTGTTTTTC
  CTTTTTAGGC TCCCTCGCTT AGTTCTTAGT TTCCCAAACT GTGTCAGGTG TTAGAGCACC
  AGGGAAGGCT GGCTCTCACC ACTTAACCTG AGGTAGTTTC AGAGGTAGGA AGTTCCATCC
  K
  TTCCTATGGG GGTGTGTGTC TTTGTAAAGC TGTATCTTCA GAGTTTACTG TATGAAAAGC
  TGCTATTTAG TGTATGACAG TGTGGAACAA GAAATGACAA TGTGGCAGTG CTTAGGATGA
  TACCAAGGGG CTGAGGAATT GTCAGAATCA GAGCAGCACC AGACCCCCCA AGAGTATTAA
  TGCTAAGTTG TTTGACCCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402211735	MGP_WTSI_19_29328649	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224432164					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402211735	MGP_WTSI_19_29328649	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29231559 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	1704 bp distal
Gm41829	predicted gene, 41829	1834 bp upstream
Jak2	Janus kinase 2	Intron
Rr405910	regulatory region 405910	13 bp downstream
Rr546090	regulatory region 546090	1708 bp distal
Rr546091	regulatory region 546091	within coordinates
Rr546092	regulatory region 546092	168 bp distal
Rr546093	regulatory region 546093	581 bp proximal
Rr546094	regulatory region 546094	1979 bp proximal
Tssr155784	transcription start site region 155784	1846 bp downstream
Tssr155785	transcription start site region 155785	1717 bp downstream
Tssr155786	transcription start site region 155786	1674 bp downstream
Tssr155787	transcription start site region 155787	1569 bp downstream