rs224432549 SNP Detail

Summary

• ID
  rs224432549
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88362481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTTGAA GGTGCCTCCT
  GCTGCCCTCT GCATAGGGTG CTGCTGTGGC CCACGCTGTG CCTCTGGTCA CCTAACCATT
  AAAAAAACTA CCTTGCCATT TCTCACCTGA CTCACAGAAA AATTCCTTTC CACTTTGCCC
  CCTCAGCATC TCCTGGCCCC GTGCTCCAGA GCTCTGATCA TCTCTGGCCC TGGGCAAAGG
  K
  CTTCTAGGGA ACTAGTTCCT GTATGCAAAA GGTAGATTTC CCCAGGCTGG CCTGTGCTGT
  GACACCTTAT GCCCGCTACT CACCCCAACC CAGGCAGACA GCCTACCCTC TCCTCAGCCC
  CCAGGGGCTC TGACTCTTGC TTAATCGGGC CCATCTAGCC TTCTTCTTAG GGATAGGGGC
  GTGCCAGTTT ATCTACCACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358796240	MGP_WTSI_3_88259096	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224432549					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358796240	MGP_WTSI_3_88259096	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88362481 () rs orientation: forward

Symbol	Name	Function Class
Rr367457	regulatory region 367457	1623 bp downstream
Rr579761	regulatory region 579761	713 bp distal
Rr579762	regulatory region 579762	513 bp proximal
Sema4a	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	within coordinates
Tssr932	transcription start site region 932	287 bp upstream
Tssr29951	transcription start site region 29951	206 bp downstream
Tssr34018	transcription start site region 34018	1773 bp upstream
Tssr34019	transcription start site region 34019	1762 bp upstream
Tssr34020	transcription start site region 34020	1748 bp upstream
Tssr34021	transcription start site region 34021	1695 bp upstream
Tssr34022	transcription start site region 34022	343 bp upstream
Tssr34023	transcription start site region 34023	321 bp upstream
Tssr34024	transcription start site region 34024	8 bp upstream
Tssr34025	transcription start site region 34025	within coordinates
Tssr34026	transcription start site region 34026	128 bp downstream
Tssr34027	transcription start site region 34027	156 bp downstream
Tssr34028	transcription start site region 34028	518 bp downstream
Tssr34029	transcription start site region 34029	552 bp downstream
Tssr34030	transcription start site region 34030	561 bp downstream
Tssr34031	transcription start site region 34031	1223 bp downstream