rs224435378 SNP Detail

Summary

• ID
  rs224435378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:82067592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCAAATGAA CTAACCAACC AAACCAGACA ACCGACCAAC
  AGAACTAATT CAACCAACCT ATCAGCCAAC TAACCAACCC AACCAACTAA ACTAACCCAC
  Y
  AGCCAAACAA ACTAATCATT CAAGCTAGCT AACTGACCAA AGGAATCAAT CCTAACAACT
  TACCAACCAG CCAAACCAAG CAACCAACCA AACCAATCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322727463	CHEV_8_83864862	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224435378					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:82067592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20635	CpG island 20635	1044 bp proximal
Gm51582	predicted gene, 51582	within coordinates
Inpp4b	inositol polyphosphate-4-phosphatase, type II	1593 bp upstream
Rr666047	regulatory region 666047	700 bp proximal
Rr666048	regulatory region 666048	1109 bp proximal
Rr666049	regulatory region 666049	1610 bp proximal
Tssr78167	transcription start site region 78167	1538 bp upstream
Tssr78168	transcription start site region 78168	1561 bp upstream
Tssr78169	transcription start site region 78169	1598 bp upstream
Tssr78170	transcription start site region 78170	1644 bp upstream
Tssr78171	transcription start site region 78171	1738 bp upstream