rs224435879 SNP Detail

Summary

• ID
  rs224435879
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29452571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCCGCCT GCCTCTGCCT
  CCCAGTGCTG GGATTAAAGT CGTGCGCCAC CACTGCCCAG GGATCTATTA TTCTTTATGA
  TTGAATAATT TTTTTGTCTT GAACTCTATC TACAGCTTAT TATTCATAAT CAGTCCTATA
  AAAGAATAGT GAACATTCTT AGGAACTTTG TTCTAGAATT AATATCCATT CTTTTATAAA
  W
  CAACCTTAAG TAAAATTTTC AAGGTTATGT GTTAGCAATA TCAGTAGTGA ACATTAGAAC
  CAGTCACATA ATTCAGATAC TGAGGAAAGA ATAAGCCAAG CATGGTGACA TATGCTTGCA
  ATCCCAGCAT TTGTTTTAGG ATAGCCTGGC CTACATACTG AGATCCAAAC CAGACTAGGC
  TATACAACGA AACCCTGTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323610822	CHEV_11_29402571	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224435879					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29452571 () rs orientation: forward

Symbol	Name	Function Class
Ccdc88a	coiled coil domain containing 88A	within coordinates
Rr239823	regulatory region 239823	1230 bp proximal
Rr249497	regulatory region 249497	1830 bp proximal
Tssr100714	transcription start site region 100714	1406 bp upstream