rs224438909 SNP Detail

Summary

• ID
  rs224438909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151823783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATTAAAA TTTAAAAGAA
  AAGAAATAAT TGTCAAAGAG GATTCTTGAT CCCCTACTAA TACCAAACAA GTACACTTGT
  GCACCAATCC CCAGCTGTGG GTTTCGCGAG AAAACTCATC TGTCTTAGTT TTGTCTGGGT
  GGACTTTGTT TGCATCCCAG GATCCAAAGG CCTAAGGTTG TTCTCAGTGA TCATGGTCCC
  R
  CCCTGTCTAG TCATTGTGTC CACTTTCAAG CCAAGCCAGA GTGAAGAAAG TCTCTTGGAA
  AACCACCACT CGCTCTCACA GTTCTGACAC CTGTTATCAT CTGGTCAGGA GGCCCAGTAC
  TTTTCTCTGG TCCTTAACCT TGACACAAGC CAGGCATAGC CATCTGTCTC ATGGCATCCT
  CTTGGGAAAG TTTCCACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028120	CHEV_3_151781110	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224438909					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151823783 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587459	regulatory region 587459			1403 bp distal
Rr587460	regulatory region 587460			1960 bp proximal
Tssr1098	transcription start site region 1098			1950 bp downstream