rs224442560 SNP Detail

Summary

• ID
  rs224442560
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80070562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACCTGGA TTTTAAAAAG
  AGAGAAACCT TAATGTTGGG TGGCATTGGT AGTGCATGCC TTTAATCCCA GTGCTTGGGA
  AGTAGAGGCA GGCTAATCTT TGTGAGTTCA AGGCCAGCCT GGTCTACAAA GTGAGTTCCA
  GGACAGCCAG CATTACACAG AAATTCTGTT TCAAAAAGAT GGGAGAAGGA CTGGAGAGAT
  K
  ACTCAAAGGT TGAGAGCACT GGCTGTTCTT CCAGAGGTCC TGAGTTCAAT TCCCAGCAAC
  CACATGGTGA CTCACAACCA TCTGTAATGG GATCCGGTGC CCTCTTCTGG CTTTCAGGCA
  TATATGCAGG CAGAACACTA CATAATAAAT AAATAAATAA ATCTTATTTT AAAAAATGGG
  AGCGAGATGG AGAGAAACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323761702	CHEV_11_79993238	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224442560					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80070562 () rs orientation: forward

Symbol	Name	Function Class
Adap2	ArfGAP with dual PH domains 2	778 bp downstream
D11Bhm113	DNA segment, Chr 11, Boehm 113	1251 bp proximal
Rr386348	regulatory region 386348	1029 bp upstream
Rr452447	regulatory region 452447	1753 bp distal
Rr452448	regulatory region 452448	94 bp proximal
Rr452449	regulatory region 452449	1827 bp proximal
Tssr103496	transcription start site region 103496	1793 bp downstream
Tssr103497	transcription start site region 103497	1743 bp downstream
Tssr103498	transcription start site region 103498	1691 bp downstream
Tssr103499	transcription start site region 103499	1509 bp downstream
Tssr103500	transcription start site region 103500	1452 bp downstream
Tssr103501	transcription start site region 103501	1169 bp downstream
Tssr103502	transcription start site region 103502	1071 bp downstream
Tssr103503	transcription start site region 103503	1012 bp downstream
Tssr103504	transcription start site region 103504	975 bp downstream
Tssr103505	transcription start site region 103505	878 bp downstream
Tssr103506	transcription start site region 103506	562 bp downstream
Tssr103507	transcription start site region 103507	401 bp downstream
Tssr103508	transcription start site region 103508	368 bp downstream