rs224443975 SNP Detail

Summary

• ID
  rs224443975
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:51181793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGGCTCTGG CCTAGATGTG CTGTGTTCCT
  TAGCTGGCCC ACTAAAACTG TGCATCGAAG ACTAGGACAC AGCTGAGCTA GCTGCCTCTG
  TGCGCGTTTG GCTGGGTGGT GATCTCTACA GGCCACCCCC AAAGCGTCTT AGGTTTGTTT
  Y
  CCGAGGGTTA AGACTCCTGT TTTGagcctg ccctggtggc atctgtaatt ccagaattta
  ggaggctgaa ttgtgtgaat ctctctacaa gttgggggct ggcttaaact atatagttga
  gatgcaggtc cagcctgggc ttcagaacga                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323667624	CHEV_11_51104468	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224443975					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51181793 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col23a1	collagen, type XXIII, alpha 1			Intron
				Noncoding-Transcript-Variant
Cpgi2834	CpG island 2834			36 bp distal
Rr446561	regulatory region 446561			1036 bp distal
Rr446562	regulatory region 446562			523 bp distal
Tssr101277	transcription start site region 101277			1212 bp downstream
Tssr101278	transcription start site region 101278			955 bp downstream