rs224450020 SNP Detail

Summary

• ID
  rs224450020
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7348283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAACTTG TGGGCTCAGA
  TGACCCTTCT GTATCGCCCT CCTCAGCAGC TGGCTCTATT TTCTAACATT ATTATTACTT
  TGAATTCATT CAAGTTTTCT ACTGTGTCAA GATTTTCCCA CTGCTGGGGA CTAACCCTAG
  ACCTGCTAGC ATGCTAGATA ATTGCTGTAC CACTAAACTA CCTTCCCCAA TCAAGTACCC
  K
  TATATACTAG ATGCTAAAAT GGCTCCTTAA AAACCTAGAA GCAGGTCTGA AGAAGGAGAA
  TAATAAATAG TTCTTCCTCT GGAATTTTGG TAATCTGACT AATCATTTAT GTTTTAAATA
  GCGTAGGAAA TTATTTTTTC CTCCTTATAA TTGATTCCCT AGGTAATAAT AATAATAATA
  ATGTAGCCTG TGATTAAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560238	MGP_WTSI_9_7348283	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224450020					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560238	MGP_WTSI_9_7348283	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7348283 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr83684	transcription start site region 83684	873 bp downstream
Tssr83685	transcription start site region 83685	810 bp downstream
Tssr83686	transcription start site region 83686	761 bp downstream
Tssr83687	transcription start site region 83687	743 bp downstream
Tssr83688	transcription start site region 83688	46 bp downstream
Tssr83689	transcription start site region 83689	285 bp upstream
Tssr83690	transcription start site region 83690	321 bp upstream
Tssr83691	transcription start site region 83691	340 bp upstream
Tssr83692	transcription start site region 83692	371 bp upstream
Tssr83693	transcription start site region 83693	407 bp upstream
Tssr83694	transcription start site region 83694	433 bp upstream
Tssr83695	transcription start site region 83695	505 bp upstream
Tssr83696	transcription start site region 83696	560 bp upstream
Tssr83697	transcription start site region 83697	619 bp upstream
Tssr83698	transcription start site region 83698	774 bp upstream
Tssr83699	transcription start site region 83699	824 bp upstream
Tssr83700	transcription start site region 83700	872 bp upstream
Tssr83701	transcription start site region 83701	917 bp upstream
Tssr83702	transcription start site region 83702	954 bp upstream
Tssr83703	transcription start site region 83703	1437 bp upstream
Tssr83704	transcription start site region 83704	1469 bp upstream
Tssr83705	transcription start site region 83705	1723 bp upstream
Tssr83706	transcription start site region 83706	1747 bp upstream
Tssr83707	transcription start site region 83707	1782 bp upstream
Tssr83708	transcription start site region 83708	1803 bp upstream
Tssr83709	transcription start site region 83709	1823 bp upstream
Tssr88064	transcription start site region 88064	407 bp downstream
Tssr88065	transcription start site region 88065	508 bp downstream
Tssr88066	transcription start site region 88066	1829 bp downstream