rs224453099 SNP Detail

Summary

• ID
  rs224453099
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100166911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTATCTA TCTATCTATC
  TATCTATCTA TCTATCTATT TATTTATTTA TTTATTTAAA AACTGCAGCC GGTCAGGCAG
  TAACAAGAGC AGGTTCAGTT ACAGTTCCAT TTAGGCTCAC ATCTTGTGAA CATCTTGTGC
  TGGACAGTTT TCTGTCAACT TGACACAGGC TACAGTCATC TGAGAAGAGG GAGCCTCAAA
  K
  GAGAAAATGC CTCTATAACA TCAAGCTGTA GGCAAGCCTG CAGGGCATTT TCTTAATCAG
  TGATTGATGG GGGAGGGCCC AGCCCACTGA GGGTGGTGAC ACTCGTAGGC TGGTGATCCT
  GGGTTCTATA TTAAGCAGGC TGAGCAAGCC ACAAGGAACA AGCTGGTGGG CAATACCCCC
  ACGATAGCCT GTGTATCAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325082835	CHEV_15_100099461	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224453099					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100166911 () rs orientation: forward

Symbol	Name	Function Class
Gm56733	predicted gene, 56733	1012 bp upstream
Rr391198	regulatory region 391198	within coordinates
Tssr4717	transcription start site region 4717	1058 bp upstream
Tssr133109	transcription start site region 133109	153 bp upstream