rs224465730 SNP Detail

Summary

• ID
  rs224465730
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74319686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCTGATAT AGTGGCTCCA GCATCGCCTC
  TACCATCAGC CCCTGCCTGA ATCTGCACTT GCTTCTCAGA CCCTTCTCCC AAAGCCAGGG
  AGCTGATTCA ACTATGCCCA TGCAAACTGC AGAAGAACCA GTGAAGGAAG CCCCTAACAT
  R
  GGAGGACCAC AGACCGAGCA GGACTGTTCA TTCTCAGGGT CAGGCCCCAC AATGGGTAGT
  TCACTGCCAA TCGCTGGGAT AGGGCTGGGT TCTAGGACTG TGACTGCACA GATGGACGGC
  CCAGCATGCC TTTATTACAG GACACAGTCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319794420	CHEV_1_74327101	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224465730					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74319686 () rs orientation: forward

Symbol	Name	Function Class
Aamp	angio-associated migratory protein	within coordinates
Gm28364	predicted gene 28364	634 bp upstream
Gpbar1	G protein-coupled bile acid receptor 1	903 bp downstream
Rr17376	regulatory region 17376	886 bp distal
Rr17377	regulatory region 17377	1915 bp proximal
Tssr7371	transcription start site region 7371	629 bp upstream
Tssr7372	transcription start site region 7372	655 bp upstream
Tssr7373	transcription start site region 7373	687 bp upstream
Tssr7374	transcription start site region 7374	698 bp upstream
Tssr12291	transcription start site region 12291	585 bp downstream