rs224469843 SNP Detail

Summary

• ID
  rs224469843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48039924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGACTTT CTGAAGAACC
  ACAAGTATGA CCCTGGCCAG AAATACCACT TTGGCAAGTT TGGTGACTAC AGTGTACTCT
  ATGAGCCCAT GGCCTATATG GATGTAAGTC TTAACACCCT TCTCCCAACC CAGGGTGTCT
  CTGTCCCTGC TGCCAAAAGG TCTTCTGCCT GCCTTCCTGC CCTGGGTTGC ACACATCCTT
  Y
  TCCTAACCTG CTATGGGCAA CTGTTGGAGA GCCTGAGCTG GGGGGAGGGG GGGTTGCTTT
  CAGCTGAGCC CACGCACAGA CTGAGCATCC GTTGCCGCTT GGGGCAGGTT TCGAGGGAAG
  ACTTGGGCCA GTGGTTTTGG TGCGGTCTGG AGGGCAGCAG CTGAGTCCTT CTCCGCTTGC
  TTTTGGAGTT GCTGAGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398352940	MGP_WTSI_17_47865948	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224469843					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398352940	MGP_WTSI_17_47865948	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48039924 () rs orientation: forward

Symbol	Name	Function Class
D17Mit201	DNA segment, Chr 17, Massachusetts Institute of Technology 201	1664 bp distal
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	1710 bp proximal
Tssr5147	transcription start site region 5147	248 bp downstream
Tssr5148	transcription start site region 5148	311 bp downstream
Tssr145004	transcription start site region 145004	257 bp downstream
Tssr145005	transcription start site region 145005	236 bp downstream
Tssr145006	transcription start site region 145006	207 bp downstream
Tssr145007	transcription start site region 145007	175 bp downstream
Tssr145008	transcription start site region 145008	154 bp downstream
Tssr145009	transcription start site region 145009	126 bp downstream
Tssr145010	transcription start site region 145010	251 bp upstream
Tssr145011	transcription start site region 145011	264 bp upstream
Tssr145012	transcription start site region 145012	276 bp upstream
Tssr145013	transcription start site region 145013	295 bp upstream
Tssr145014	transcription start site region 145014	1081 bp upstream
Tssr145015	transcription start site region 145015	1143 bp upstream
Tssr145016	transcription start site region 145016	1154 bp upstream
Tssr145017	transcription start site region 145017	1599 bp upstream
Tssr145018	transcription start site region 145018	1611 bp upstream
Tssr145019	transcription start site region 145019	1642 bp upstream
Tssr145020	transcription start site region 145020	1663 bp upstream
Tssr145021	transcription start site region 145021	1689 bp upstream
Tssr145022	transcription start site region 145022	1721 bp upstream
Tssr145023	transcription start site region 145023	1748 bp upstream
Tssr145024	transcription start site region 145024	1859 bp upstream
Tssr148459	transcription start site region 148459	198 bp upstream
Tssr148460	transcription start site region 148460	146 bp upstream
Tssr148461	transcription start site region 148461	134 bp upstream
Tssr148462	transcription start site region 148462	91 bp upstream
Tssr148463	transcription start site region 148463	279 bp downstream
Tssr148464	transcription start site region 148464	357 bp downstream
Tssr148465	transcription start site region 148465	1122 bp downstream
Tssr148466	transcription start site region 148466	1135 bp downstream
Tssr148467	transcription start site region 148467	1630 bp downstream
Tssr148468	transcription start site region 148468	1661 bp downstream
Tssr148469	transcription start site region 148469	1751 bp downstream