rs224493439 SNP Detail

Summary

• ID
  rs224493439
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180769935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCGCAAC TATCCTAGGC
  ACGGCCCAGT GCCCTCTCAG TGGGGATGTG CTAGGGCACA AAGGAAAGGC AGTTCGGAGA
  CGTCCTCTCC CAGCCTTGTG GGCGTTAGCT GGTCTGGTCC CGCCCCTAGA CCTCCGTGAG
  GACGGCCACG CGTGGACCAG CGTTAGAGAA CCACATTGGG GTTCACTGCC CGGCGCACAG
  W
  GCTCGAGGTC CTGCTGGGGC CGGCGCGAGC GAAGAGTCCA AATTAGGTAA CGCGTGGACA
  CAGTTCTGCG CATGTGCAAG AGGAGCCGGA GTTTCACTTT GTAACTTTTA AGTGGTGCGG
  ACGCCACCCC GCCTCGCCAG GTACGGACTG ACCACTCCCC CGGGCGCGCG CGCCGCGCCG
  CCGCCGCAGG TAAAGTGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352597651	MGP_WTSI_1_182872501	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224493439					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352597651	MGP_WTSI_1_182872501	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180769935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1127	CpG island 1127	within coordinates
Cpgi1128	CpG island 1128	1011 bp proximal
Rr424644	regulatory region 424644	1319 bp distal
Rr424645	regulatory region 424645	966 bp distal
Rr424646	regulatory region 424646	within coordinates
Rr424647	regulatory region 424647	100 bp proximal
Rr424648	regulatory region 424648	1509 bp proximal
Rr424649	regulatory region 424649	1642 bp proximal
Rr424650	regulatory region 424650	1676 bp proximal
Tmem63a	transmembrane protein 63a	mRNA-UTR
Tssr324	transcription start site region 324	1687 bp upstream
Tssr10503	transcription start site region 10503	18 bp downstream
Tssr10504	transcription start site region 10504	2 bp downstream
Tssr10505	transcription start site region 10505	64 bp upstream
Tssr10506	transcription start site region 10506	82 bp upstream
Tssr10507	transcription start site region 10507	130 bp upstream