rs224493979 SNP Detail

Summary

• ID
  rs224493979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59677866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCGTAAGT CAGGGTCAGG
  CACATTTTTA ACGTGTTCGT ATGTTAAACA ACACAACAAT GGCAAAACGC CTTCTGGTGA
  AGAATAGAAA CCTATCCTAT CGTATGTGGT AGGGTATTTG GAAGAGCTAA TGGTCTGTTT
  ACCAAATCTA AGACTAAACA TAAATTAATC CTCCACTTTG GTTTTCTTCA CTAACATGCA
  R
  AGAACCATGT TACTACATGC CAATCATATG ATCTGTCAAT CATATCCCTT TCTGCAGTGA
  CTTTATTGAT CTTGGACTGT TGAGTAGTGA GTCAGTCCGT CGCTCCGAAG ATACCAATCA
  AGTTCAACTG ATAAATAATT TCATTTGTTC ATGGCCAGTG TAACCTTACC TGTGGAATGG
  ACCAGTGTCC TGAAGATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324646617	CHEV_14_60059254	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224493979					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59677866 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	534 bp upstream
Cpgi6560	CpG island 6560	155 bp proximal
Gm45935	predicted gene, 45935	within coordinates
Rr404137	regulatory region 404137	340 bp upstream
Rr493048	regulatory region 493048	1509 bp distal
Rr493049	regulatory region 493049	within coordinates
Rr493050	regulatory region 493050	448 bp proximal
Rr493051	regulatory region 493051	575 bp proximal
Setdb2	SET domain, bifurcated 2	within coordinates
Tssr125903	transcription start site region 125903	155 bp upstream
Tssr125904	transcription start site region 125904	530 bp upstream
Tssr129008	transcription start site region 129008	362 bp downstream
Tssr129009	transcription start site region 129009	671 bp downstream
Tssr129010	transcription start site region 129010	686 bp downstream
Tssr129011	transcription start site region 129011	885 bp downstream
Tssr129012	transcription start site region 129012	892 bp downstream
Tssr129013	transcription start site region 129013	894 bp downstream