rs224500819 SNP Detail

Summary

• ID
  rs224500819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80073392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTGAGT GCTGGGATTA
  CAGATGTGTG CCTTCATGCC TGATGAGGTC CTCTGAATTT ACTGATTTTT TTTTAATTCC
  CCGGTCAGAG AAGCTGCAAT ACAAATTCTG GATGTGTCTC TCCAGAGTGC AGCTCCCTGG
  GGAGGTGGAT CCTCTCTAGC TTCTAAAGTT CTTTGGACCT GACTGCTGAG GTACCTGCTA
  R
  AGCAGTGATT CTCAATGAGT GGGTCATAAC ACCTTTGGCA AACTCCTATA TTCACATGAC
  TATTCATAAC AGTTGCAAAA TTACAGTTGT GAAGTAGCAA GAAAATTATT TTTTAAAGAT
  TTGTTCATTT ATTTTATGTA TATGAGTACA CTGTAGCTGT CTTCAGACAT ACCAGATCCC
  ATTACAGATG GTTGTGAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323761719	CHEV_11_79996068	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224500819					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80073392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3379	CpG island 3379	1195 bp proximal
D11Bhm113	DNA segment, Chr 11, Boehm 113	1493 bp distal
Rnf135	ring finger protein 135	1285 bp upstream
Rr386348	regulatory region 386348	747 bp downstream
Rr402781	regulatory region 402781	1149 bp upstream
Rr452449	regulatory region 452449	982 bp distal
Rr452450	regulatory region 452450	795 bp proximal
Rr452451	regulatory region 452451	802 bp proximal
Rr452452	regulatory region 452452	989 bp proximal
Tssr3599	transcription start site region 3599	1341 bp upstream
Tssr103509	transcription start site region 103509	1295 bp upstream
Tssr103510	transcription start site region 103510	1320 bp upstream