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rs224503534 SNP Detail
Summary
  • ID
    rs224503534
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:19431845 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGTGGAGTC TGTTTAGATA
CTACAAGCAT GCACTGTCTT GTATCCTATG TAGTTCAGAG CCGAGACTAG GCAGGTGTGG
AATTAGAAAA TGTATACCCC ACTTTTAAGA GCAACTAAGA AATCAACTTT TTATTGTGTG
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TACCCTTGGA GGTCAGAGTT CTAGAGGGAA
Y
TGGCTCTCTC CTTCCACTAT GTTGGTCTCA GAGTTAAGTC TTCAAGCTTT ATGATAAGCA
CCTTTACCCA CTAAGCCATC AATCCTCTTA TAGTTAGGGG AAATCAAGGC CTAAAGAGTA
TATAAAACAG CTGCTCAGGG CTATTGAATC TCAGAGAGGT CTCAGAACCG CCTCAGCCTC
AACCCACCAG CAGAAGAGAT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754810 MGP_WTSI_7_20283269 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224503534 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754810 MGP_WTSI_7_20283269 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19431845 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E within coordinates
Cpgi18507 CpG island 18507 842 bp distal
Cpgi18508 CpG island 18508 479 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 1 bp distal
Gm71725 predicted gene, 71725 within coordinates
Rr155346 regulatory region 155346 1245 bp distal
Rr155347 regulatory region 155347 1756 bp proximal
Rr167194 regulatory region 167194 within coordinates
Tssr2112 transcription start site region 2112 1459 bp downstream
Tssr2113 transcription start site region 2113 1429 bp downstream
Tssr2114 transcription start site region 2114 1303 bp downstream
Tssr2115 transcription start site region 2115 1275 bp downstream
Tssr2116 transcription start site region 2116 1205 bp downstream
Tssr2117 transcription start site region 2117 1151 bp downstream
Tssr2118 transcription start site region 2118 1056 bp downstream
Tssr2119 transcription start site region 2119 1079 bp upstream
Tssr2120 transcription start site region 2120 1006 bp downstream
Tssr2121 transcription start site region 2121 980 bp downstream
Tssr2122 transcription start site region 2122 255 bp upstream
Tssr64880 transcription start site region 64880 1646 bp downstream
Tssr64881 transcription start site region 64881 1583 bp downstream
Tssr64882 transcription start site region 64882 1524 bp downstream
Tssr64883 transcription start site region 64883 1507 bp downstream
Tssr64884 transcription start site region 64884 1479 bp downstream
Tssr64885 transcription start site region 64885 1401 bp downstream
Tssr64886 transcription start site region 64886 1366 bp downstream
Tssr64887 transcription start site region 64887 1348 bp downstream
Tssr64888 transcription start site region 64888 1130 bp downstream
Tssr64889 transcription start site region 64889 1023 bp downstream
Tssr64890 transcription start site region 64890 989 bp downstream
Tssr64891 transcription start site region 64891 961 bp downstream
Tssr64892 transcription start site region 64892 930 bp downstream
Tssr64893 transcription start site region 64893 836 bp downstream
Tssr64894 transcription start site region 64894 422 bp downstream
Tssr64895 transcription start site region 64895 343 bp downstream
Tssr64896 transcription start site region 64896 319 bp downstream
Tssr70973 transcription start site region 70973 1591 bp upstream
Tssr70974 transcription start site region 70974 1558 bp upstream
Tssr70975 transcription start site region 70975 1533 bp upstream
Tssr70976 transcription start site region 70976 1481 bp upstream
Tssr70977 transcription start site region 70977 1460 bp upstream
Tssr70978 transcription start site region 70978 1437 bp upstream
Tssr70979 transcription start site region 70979 1429 bp upstream
Tssr70980 transcription start site region 70980 1415 bp upstream
Tssr70981 transcription start site region 70981 1391 bp upstream
Tssr70982 transcription start site region 70982 1362 bp upstream
Tssr70983 transcription start site region 70983 1341 bp upstream
Tssr70984 transcription start site region 70984 1281 bp upstream
Tssr70985 transcription start site region 70985 1246 bp upstream
Tssr70986 transcription start site region 70986 1217 bp upstream
Tssr70987 transcription start site region 70987 1172 bp upstream
Tssr70988 transcription start site region 70988 1153 bp upstream
Tssr70989 transcription start site region 70989 1115 bp upstream
Tssr70990 transcription start site region 70990 1096 bp upstream
Tssr70991 transcription start site region 70991 1066 bp upstream
Tssr70992 transcription start site region 70992 1054 bp upstream
Tssr70993 transcription start site region 70993 1025 bp upstream
Tssr70994 transcription start site region 70994 1010 bp upstream
Tssr70995 transcription start site region 70995 977 bp upstream
Tssr70996 transcription start site region 70996 951 bp upstream
Tssr70997 transcription start site region 70997 885 bp upstream
Tssr70998 transcription start site region 70998 865 bp upstream
Tssr70999 transcription start site region 70999 809 bp upstream
Tssr71000 transcription start site region 71000 398 bp upstream
Tssr71001 transcription start site region 71001 332 bp upstream
Tssr71002 transcription start site region 71002 313 bp upstream
Tssr71003 transcription start site region 71003 285 bp upstream
Tssr71004 transcription start site region 71004 267 bp upstream
Tssr71005 transcription start site region 71005 71 bp downstream
Tssr71006 transcription start site region 71006 104 bp downstream
Tssr71007 transcription start site region 71007 162 bp downstream
Tssr71008 transcription start site region 71008 268 bp downstream
Tssr71009 transcription start site region 71009 286 bp downstream
Tssr71010 transcription start site region 71010 430 bp downstream
Tssr71011 transcription start site region 71011 463 bp downstream
Tssr71012 transcription start site region 71012 499 bp downstream
Tssr71013 transcription start site region 71013 1125 bp downstream
Tssr71014 transcription start site region 71014 1674 bp downstream
Tssr71015 transcription start site region 71015 1799 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory