rs224513477 SNP Detail

Summary

• ID
  rs224513477
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108857803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTACGGAC GCACGTCACA
  ATCGCAGCAA GACTTCTCCC ATCATCCTCC GCCTCTTTTC CTTCGCCCCG CCCACGTCAG
  GTTTCGAAAT GCTCTCTGGG TGCGCCAGGA ACCCGGCCTA TTTCTATTGG TCTCTCGCTT
  CCCCTACTCC CATTGGCTGT TTCTGCAAAC GTGACGGCCG TTGTGCGTTG TGATTGGCTA
  S
  AGTCCATAGC GTCATCGGCT GTCAGGAGGG TGGGATGAAG AAAGTCGGTG TGAGCGAGGC
  CGGGTTGGAG GAGGGGTTCA GGCCTGTCCT CCCCAGCGGC TGGGGCAGCA ACAACGCCGG
  CCGCCGCCGT CGCCCCTGGG ACGCGGAGGA GGAGGAGTGG CTGGAGGTGT AGGAGGAGGA
  GGTGGGCCTG GGGAGCGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362793961	MGP_WTSI_4_108673211	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224513477					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362793961	MGP_WTSI_4_108673211	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108857803 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14568	CpG island 14568	within coordinates
Gm55125	predicted gene, 55125	1900 bp upstream
Nrdc	nardilysin convertase	49 bp upstream
Rr99732	regulatory region 99732	within coordinates
Rr367667	regulatory region 367667	within coordinates
Tssr38326	transcription start site region 38326	within coordinates
Tssr38327	transcription start site region 38327	203 bp upstream
Tssr38328	transcription start site region 38328	292 bp upstream
Tssr38329	transcription start site region 38329	308 bp upstream
Tssr38330	transcription start site region 38330	384 bp upstream
Tssr38331	transcription start site region 38331	448 bp upstream