rs224514092 SNP Detail

Summary

• ID
  rs224514092
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:100751364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGCGCCG GTAATCGAGG
  GCGGAGGCAA GGAGGGAGCG ACCGCTGCTG GGAGGGGTGC TGGGGCGAGC TCGCGCGCTG
  TGTTTGGTCT ATCGGAGGCA GCTGACCTTT GAGGAGGAAA TCGCTGCTCT CTGCTCCTTC
  CTGTAGTAAC AGCCTCCACC GCCGCCGCCG TCAAGAGCCG TCAGGAGCCG TCAGAAGCCC
  S
  GGCCTGGAGC GACAGCCGCA GGCGCTCCGC AGCACCAGGT GGGTGGGTCG CCGTGACTCC
  GCCCGCGGCG CGTGGACAGA GGATCTAGGC TGCAGCCACG TCCCTGGGAT CTAGCACCCT
  GGAGTCCCCA CGGCCTGACA CGGGACAGAC ATCTGTCCCG CCTTCGAATG GGAGCTTCAG
  AGGGAGCAGG GACAAGGGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384467519	MGP_WTSI_11_100721852	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224514092					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384467519	MGP_WTSI_11_100721852	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100751364 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3835	CpG island 3835			within coordinates
Gm72578	predicted gene, 72578			2 bp upstream
Rr456792	regulatory region 456792			872 bp distal
Rr456793	regulatory region 456793			44 bp distal
Rr456794	regulatory region 456794			388 bp distal
Rr456795	regulatory region 456795			within coordinates
Stat5a	signal transducer and activator of transcription 5A			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr104969	transcription start site region 104969			1055 bp downstream
Tssr104970	transcription start site region 104970			1032 bp downstream
Tssr104971	transcription start site region 104971			653 bp downstream
Tssr104972	transcription start site region 104972			422 bp downstream
Tssr104973	transcription start site region 104973			353 bp downstream
Tssr104974	transcription start site region 104974			265 bp downstream
Tssr104975	transcription start site region 104975			236 bp downstream
Tssr104976	transcription start site region 104976			194 bp downstream
Tssr104977	transcription start site region 104977			188 bp downstream
Tssr104978	transcription start site region 104978			110 bp downstream
Tssr104979	transcription start site region 104979			1 bp downstream
Tssr104980	transcription start site region 104980			109 bp upstream
Tssr104981	transcription start site region 104981			1617 bp upstream