rs224530477 SNP Detail

Summary

• ID
  rs224530477
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13440631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCTGGGG GGCGGTGAGG
  GTCATGAGCA GGATTGGTGC AGTAGATGCT GACCTCTGGG GAGGGTTTCT AGCCTGCAGG
  TGGGTCTCTA GGGGAAAGGC ATCTGAACAT GTCACATGTC ACATTTTTCA CTTGGGAAAC
  ACATGTTGTG GCTTGCACCT TTAATCCCAG CACTTGGGAG GCAGAGGCAG GCAGATCTCT
  K
  TTTGGGGCCC AGCCTGATTT ACATAGAGTT TCGGGATATC CAGGGCTACA TAAAGATATT
  CTGTCTCAAT GGGAAAAAAA TAAAAGGGTT TTCATTGGGG ACTGGGGAAA TGGCTTAACG
  TTTAAGATCA CTGGCTGCTC TTCCAGAGGA CCCTGATTAG ATCCCCAGCA GCCACATATC
  AACTCACAAC CAGCTGTAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322506505	CHEV_8_13390631	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224530477					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13440631 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	Intron
Gm45410	predicted gene 45410	475 bp upstream
Rr659923	regulatory region 659923	217 bp proximal
Tssr80441	transcription start site region 80441	1816 bp upstream
Tssr80442	transcription start site region 80442	929 bp upstream
Tssr80443	transcription start site region 80443	765 bp upstream
Tssr80444	transcription start site region 80444	528 bp upstream