rs224542778 SNP Detail

Summary

• ID
  rs224542778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113881152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGGTGCC AGATCTTCTC
  CATGTCATCC CAGTTGGTGA TAATGCCATG TTCAATGGGG TACTTCAGAG TCAGGATACC
  TCGCTTGCTC TGGGCTTCAT CACCTACATA GGAGTCCTTC TGTCCCATAC CCACCATGAC
  ACCCTGTAAA AAAGGAGATG AGAATATCGT GTTCCCACCA AGGCAAGAAT ATGGTCCTGG
  Y
  CTTGTTAAGC TATATCCAGT TCTCGAGGCA ATGAATAGCT GTAAAATACT AGAAAAAGTA
  AAAGCAGAAT TTGAAAGTTA GGCATGCTTG TTCATGCCTA TAATGCCAGC ATTCAGAAGG
  CTGAAACAGG CCACAGCTTA AATTTAGCCT GGCCTATAGA GTCAAGTACC AGGGCAGCCT
  GGGACATAGT GTGAAACCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315595	MGP_WTSI_2_113876407	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224542778					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315595	MGP_WTSI_2_113876407	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113881152 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr602	transcription start site region 602	191 bp upstream
Tssr19435	transcription start site region 19435	1493 bp downstream
Tssr19436	transcription start site region 19436	1089 bp downstream
Tssr19437	transcription start site region 19437	367 bp downstream
Tssr19438	transcription start site region 19438	251 bp downstream
Tssr19439	transcription start site region 19439	218 bp downstream
Tssr25670	transcription start site region 25670	1429 bp upstream
Tssr25671	transcription start site region 25671	1366 bp upstream
Tssr25672	transcription start site region 25672	1349 bp upstream
Tssr25673	transcription start site region 25673	1318 bp upstream
Tssr25674	transcription start site region 25674	1072 bp upstream
Tssr25675	transcription start site region 25675	1040 bp upstream
Tssr25676	transcription start site region 25676	1017 bp upstream
Tssr25677	transcription start site region 25677	992 bp upstream
Tssr25678	transcription start site region 25678	327 bp upstream
Tssr25679	transcription start site region 25679	317 bp upstream
Tssr25680	transcription start site region 25680	306 bp upstream
Tssr25681	transcription start site region 25681	222 bp upstream
Tssr25682	transcription start site region 25682	183 bp upstream
Tssr25683	transcription start site region 25683	174 bp upstream
Tssr25684	transcription start site region 25684	56 bp upstream
Tssr25685	transcription start site region 25685	284 bp downstream
Tssr25686	transcription start site region 25686	627 bp downstream
Tssr25687	transcription start site region 25687	1258 bp downstream
Tssr25688	transcription start site region 25688	1322 bp downstream
Tssr25689	transcription start site region 25689	1388 bp downstream
Tssr25690	transcription start site region 25690	1406 bp downstream
Tssr25691	transcription start site region 25691	1528 bp downstream