rs224546319 SNP Detail

Summary

• ID
  rs224546319
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95240402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTCACAAG GGAAATACTT CAGCTCTTGT
  TTGAAAATGC CTGCAAAATT AAGTAGAATT CACAGATACC TGTCTTGTGA CGTTCTGCAT
  TTTAAGATTG GAACAGGCTG TCTAGAACAT GTCTTCAGCT GTGATTTTAG AGGTCCTCTA
  W
  AGCTACTGCA GTGTCTTCAG GGTAATCCTA ATAGTTTCCA GGACATGGAC TAAATTGCAG
  TTCCAGACCC TTAAACAGCT GACTCTTGAC AGATGTCTGA GAAAGCCTTT TAAAAAATCT
  GTTTATAATA GACTGAAAGA AAGCTCAAGA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319848303	CHEV_1_97209254	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224546319					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95240402 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	751 bp proximal
Fam174a	family with sequence similarity 174, member A	951 bp upstream
Rr29863	regulatory region 29863	398 bp proximal
Rr396183	regulatory region 396183	684 bp upstream
Tssr8214	transcription start site region 8214	930 bp upstream
Tssr8215	transcription start site region 8215	1001 bp upstream
Tssr8216	transcription start site region 8216	1410 bp upstream
Tssr8217	transcription start site region 8217	1429 bp upstream
Tssr8218	transcription start site region 8218	1447 bp upstream
Tssr8219	transcription start site region 8219	1473 bp upstream
Tssr13058	transcription start site region 13058	1378 bp downstream