rs224548138 SNP Detail

Summary

• ID
  rs224548138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45816386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGCTAC CTCAGAGGCC
  GCCATCTGCA CTCTGGACAT TCAGAAACAA ACCAAAGGAC ACAGGTGACA AAGCTGAAAG
  CTTTCCTCTG CATAATGCCC ACTGTGTCAG TTCCTCCAAA CACCTAAGAA AGAGTATTCT
  GCAGGAGGGC AATAAAAGAG CCACTTCCGG CCATAAGTCC CAGTCAGCAC TGCCCTCAGG
  Y
  GCTGTCATAC ACATAAACAT AAGGCAGACT ACTTTTGTTC TGGACAGAAA TGCAGTCATT
  CCAAACAGAC GATAATCTGA TAAGAATTTT CTGAATGGTC CACATACCTA CCTCCATTTA
  TTAAAGTTGA CCTTTTTGGC CAAGATTCAA TAATATGTTT AAATCCCTTT TGGCTGTTGC
  AGTCAAAGCA TTCTCTATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377444873	MGP_WTSI_9_45713171	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224548138					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377444873	MGP_WTSI_9_45713171	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45816386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21697	CpG island 21697	613 bp proximal
Pcsk7	proprotein convertase subtilisin/kexin type 7	1409 bp upstream
Rnf214	ring finger protein 214	within coordinates
Rr677992	regulatory region 677992	643 bp proximal
Rr677993	regulatory region 677993	1309 bp proximal
Rr677994	regulatory region 677994	1353 bp proximal
Rr677995	regulatory region 677995	1420 bp proximal
Rr677996	regulatory region 677996	1421 bp proximal
Rr677997	regulatory region 677997	1771 bp proximal
Rr677998	regulatory region 677998	1908 bp proximal
Tssr84815	transcription start site region 84815	1425 bp upstream
Tssr84816	transcription start site region 84816	1837 bp upstream
Tssr89273	transcription start site region 89273	1281 bp downstream
Tssr89274	transcription start site region 89274	1749 bp downstream
Tssr89275	transcription start site region 89275	1810 bp downstream