rs224554400 SNP Detail

Summary

• ID
  rs224554400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23718050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGCAAT TTAAATAAAG
  CTGTGGCTAT CCTTTTAGAG TCCTGAAATA TTATGCGTTA ACTATCCAAT CAAAACAAGG
  TTTTTTCATA TACAAGCTAC CATTGGTTTA GGTAAAACTC TATGTGTAGC CAACGAGATC
  ACTCCGTTTT CGCGCCAGAA GTTGAGTATT AGAATGGTGC TGTGGCTGCA TCATTATACG
  Y
  TGAACAGATC CTGACAGCAA GGTACCTACA ATGTCTGGAC GCGGCAAACA GGGTGGCAAG
  GCTCGCGCCA AGGCCAAGAC CCGCTCCTCC CGGGCCGGCC TGCAGTTCCC CGTGGGCCGC
  GTGCACCGGC TGCTCCGCAA GGGCAACTAC TCGGAGCGCG TGGGCGCCGG CGCCCCGGTG
  TACCTGGCGG CCGTGCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324289721	CHEV_13_23625749	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224554400					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23718050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	1277 bp proximal
Gm55640	predicted gene, 55640	234 bp downstream
Gm60769	predicted gene, 60769	177 bp upstream
H2ac10	H2A clustered histone 10	26 bp upstream
H3c8	H3 clustered histone 8	1538 bp upstream
Rr403647	regulatory region 403647	within coordinates
Rr403648	regulatory region 403648	1256 bp upstream
Tssr4007	transcription start site region 4007	175 bp upstream
Tssr118828	transcription start site region 118828	within coordinates
Tssr118829	transcription start site region 118829	1531 bp upstream
Tssr121712	transcription start site region 121712	219 bp upstream
Tssr121713	transcription start site region 121713	1285 bp downstream