rs224554963 SNP Detail

Summary

• ID
  rs224554963
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81911746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACCAAGCG GTCTCTGGTA GGTGGCTAAC
  CTTTCCTACC GAATCTTGTT TAAGAACTGA CAGAGAGGTg gggctgtaga ggtggctcag
  cagttaagag aacatatcct gtccatgcat cgtacccagg ttctggtccc agcatccaca
  W
  ggtggctcac agccaaccat actttggttt caggagacta gaccccttct gacctctgca
  tgcatgaggc atgcacgagg cgtgcacatg ctgcacatac atacatgcag ataaaTAAAT
  CTTTAAACAA CAGGagctgg acatgatggc                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325033189	CHEV_15_81857975	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224554963					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81911746 () rs orientation: forward

Symbol	Name	Function Class
Rr506381	regulatory region 506381	97 bp proximal
Tssr132336	transcription start site region 132336	480 bp upstream
Tssr132337	transcription start site region 132337	509 bp upstream
Tssr132338	transcription start site region 132338	544 bp upstream
Tssr132339	transcription start site region 132339	566 bp upstream
Tssr132340	transcription start site region 132340	963 bp upstream
Tssr132341	transcription start site region 132341	1658 bp upstream
Tssr135523	transcription start site region 135523	304 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates