rs224555653 SNP Detail

Summary

• ID
  rs224555653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89246978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCGGACC CAGACTGGGC
  AGAAGCAAGC CAGAGGCATC CTAAGTGACA CATTCTTGTT GACCCTTTCT GGGAAGTGAT
  CCTATTCTAC AGGCCCTGGT TTGACCCAGC AGCGTCTCCT AGTGGCCAGA CCTGCAAACA
  GCAGGAACTA CCCAGCTTCC AGGAGCAGAC ACATTCCAAG ATCTCACATT TATTACAACA
  R
  AGCAGAGATA GACAGTGTCC ATGTCCTTCC GCCACCTACT CCAGCCCCGG CTTCGGCCCC
  TCCCCAGCAT CCCGCTGCAG CTATTTTAGT GCGTCCCCAG GTATTGCTTA ACAGCGCCTG
  GTGGTTCTTT AGGGCTGGAC ACCAGATTGT CTGTTCTCCT GCTTCTCTAG TGTTTGGGGC
  AGAGGTTCCA TTTCTTTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358810844	MGP_WTSI_3_89143593	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224555653					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358810844	MGP_WTSI_3_89143593	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89246978 () rs orientation: forward

Symbol	Name	Function Class
4731419I09Rik	RIKEN cDNA 4731419I09 gene	within coordinates
Adam15	ADAM metallopeptidase domain 15	within coordinates
Cpgi13423	CpG island 13423	1450 bp distal
Efna4	ephrin A4	1643 bp upstream
Rr580049	regulatory region 580049	1811 bp distal
Rr580050	regulatory region 580050	1153 bp distal
Rr580051	regulatory region 580051	71 bp distal
Rr580052	regulatory region 580052	1000 bp proximal
Tssr30091	transcription start site region 30091	22 bp downstream
Tssr34115	transcription start site region 34115	1692 bp upstream
Tssr34116	transcription start site region 34116	1605 bp upstream
Tssr34117	transcription start site region 34117	469 bp downstream
Tssr34118	transcription start site region 34118	764 bp downstream