rs224557623 SNP Detail

Summary

• ID
  rs224557623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158224853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAGAGTC TTTGTTTTTA
  TGATTACTAA AACTTCATGT CTTAAATTTA TATCTTTGTA AAACAGAAAA AAATTTAAAT
  AGCAATGTGA TCAAACTTGG ATTTTAAAAA AAATAGGGGC AAATTGGAAC CAAGAAGGAA
  TATTTCTTAT GGATAATACG GTGGCCAAGG ACTGAAAAAC AGAAGTGTAG TCGATAGGAG
  Y
  TAGATTACTT GAAAGTTTCC ACCTAAGATT TTTTTGGTAC AGCCTGAGAA TAGGTGGGAT
  GTAGTAAGGA ATAGAACGGT CCAGAAAGTT CTTCTTCCAT GGAAATGTTA TTCTTCGATA
  CTGTTCACAT GTTTGTTTTG TTTGCAGTGT CAACCGGACA TGTTCTTTCA CACTCTCGTG
  GGACAACCCA GTTGTTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356281266	MGP_WTSI_2_158208669	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224557623					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356281266	MGP_WTSI_2_158208669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158224853 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	1535 bp downstream
Tssr21318	transcription start site region 21318	759 bp downstream
Tssr21319	transcription start site region 21319	345 bp downstream
Tssr21320	transcription start site region 21320	309 bp downstream
Tssr21321	transcription start site region 21321	199 bp downstream
Tssr21322	transcription start site region 21322	76 bp downstream
Tssr21323	transcription start site region 21323	32 bp downstream
Tssr21324	transcription start site region 21324	within coordinates
Tssr21325	transcription start site region 21325	31 bp upstream
Tssr21326	transcription start site region 21326	53 bp upstream
Tssr21327	transcription start site region 21327	102 bp upstream
Tssr21328	transcription start site region 21328	140 bp upstream
Tssr21329	transcription start site region 21329	153 bp upstream
Tssr21330	transcription start site region 21330	175 bp upstream
Tssr21331	transcription start site region 21331	748 bp upstream
Tssr21332	transcription start site region 21332	885 bp upstream
Tssr21333	transcription start site region 21333	917 bp upstream
Tssr21334	transcription start site region 21334	1684 bp upstream
Tssr27228	transcription start site region 27228	268 bp downstream