rs224562451 SNP Detail

Summary

• ID
  rs224562451
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:119996650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTACCAG CAGAGAGTGG
  AGAACAGGCT ATCATTTTTA GGAAGCATCA CCTGTCCCAG TGTTTCGTGA ACACTCTTCT
  CCATCACCTT CTGATTGGTT TAATAAAGAC CTATCACAGA GCAGTAGAGG AAAAGCAGGA
  CTTCCGGGTA GAGCTAGGAA CTCTGGGAAA CAAGCAGGCA TGGGTGATTC GCAGCCAGAC
  W
  CGGAGGAGGA AACAGGCGCA GGGACTGACG GAGAGGTAAG GGGCCATGTG GCAGACGTAG
  ATTAGAATAA ATGGGTTATT AAGTTACAGG AGCTAGCTGG GAACATGCCT AAGCTGTAAG
  GCCTAGGATT CATAAAGAAA TAAAGCCTCT TTGTCTTTAT TCAGAAGGTG GCTGGTCGAG
  ACAGTCTGGC AATGCATACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381988260	MGP_WTSI_10_119597801	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224562451					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381988260	MGP_WTSI_10_119597801	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:119996650 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D10Mit236	DNA segment, Chr 10, Massachusetts Institute of Technology 236			1925 bp distal
Gm67388	predicted gene, 67388			within coordinates
Irak3	interleukin-1 receptor-associated kinase 3			Intron
				Noncoding-Transcript-Variant
Rr385391	regulatory region 385391			1570 bp upstream
Tssr3374	transcription start site region 3374			366 bp downstream
Tssr95979	transcription start site region 95979			14 bp downstream
Tssr95980	transcription start site region 95980			1465 bp upstream
Tssr99537	transcription start site region 99537			1909 bp upstream
Tssr99538	transcription start site region 99538			1199 bp upstream
Tssr99539	transcription start site region 99539			1161 bp upstream
Tssr99540	transcription start site region 99540			1126 bp upstream
Tssr99541	transcription start site region 99541			639 bp upstream
Tssr99542	transcription start site region 99542			696 bp downstream