rs224562672 SNP Detail

Summary

• ID
  rs224562672
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:7867243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTATTC ATCTCCTGCC
  ACAGGCAACA GATTTTTAAA AATGATTATA GTACTTGAAT TTACTCCCTA GTAAATATGT
  AACCTTTGTG ATTTGTAGTA GTTATTAGTA AATAAATCAT AAACACTGAT TGGTTTTTGA
  TCAACAATGT TAAGACCTAT AAGCTTCTAG TTTTGTTATC ACCAACTGGC AAATATGTAA
  R
  TTTGTTTGAA TATTTTATTT TATTTATTTT TGTCTTTTCA AGACAGAGTT TCTCTGTGTA
  GTCCTGGCTG TCCTGAAACT CACTCTGTAG ACCAGGATGG CCTGGAACTC AGAAATTTGC
  CTGCCTCTGC CTCCCAAGTG CTGGGATTAA AGGTGTGGGC CACCACTGCT AGGCTGAAGA
  TGTGTTCTTG AAAATAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399628961	MGP_WTSI_18_7867241	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224562672					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399628961	MGP_WTSI_18_7867241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7867243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9688	CpG island 9688	1193 bp proximal
Gm9993	predicted gene 9993	775 bp downstream
Rr405554	regulatory region 405554	1724 bp upstream
Rr533616	regulatory region 533616	1099 bp proximal
Rr533617	regulatory region 533617	1860 bp proximal
Tssr149978	transcription start site region 149978	1230 bp upstream
Tssr149979	transcription start site region 149979	1580 bp upstream
Tssr149980	transcription start site region 149980	1634 bp upstream
Tssr149981	transcription start site region 149981	1896 bp upstream
Tssr149982	transcription start site region 149982	1916 bp upstream
Tssr149983	transcription start site region 149983	1971 bp upstream
Tssr152379	transcription start site region 152379	1818 bp downstream
Wac	WW domain containing adaptor with coiled-coil	1589 bp upstream