rs224565032 SNP Detail

Summary

• ID
  rs224565032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACTTGTG TGCCAAGTGT
  GATTCTGTTT TCTCCTTTTT TTTTTTTTTT TTTTTGCATC GGTGATGGAA CACACTGTAG
  GAAAGAAAAA AAGTCTCAAT CTGCAAGATG TGGCGGGGTG ATAACTGCAG AAAGTTCGGG
  GGGATCTGGG AAATTCCTCA GCTCAGCTGA GGTCACAAAT TCTGTTATTT TGTTCAAGCC
  Y
  TCAACGACTG ACTGAGTCAT CAAGCAAGGA GCATGGTTTC GATTTCAGTT CCTTTTATCT
  CAATTTGTGT TTGGGCGGCT GTTACTTTGC CACTTCTAAC AGTGGCTGCT CCAAGGAGCC
  TGGAGCAGTA GGAAGCTCAG GGAAAGAACT AAGTTGGCTG AGGACTGTCC CTGTTACAGA
  GCCAGTGCCT GGGTGAGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360023110	MGP_WTSI_3_142223462	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224565032					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360023110	MGP_WTSI_3_142223462	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266259 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	within coordinates
Rr398085	regulatory region 398085	within coordinates
Rr586453	regulatory region 586453	77 bp distal
Rr586454	regulatory region 586454	within coordinates
Rr586455	regulatory region 586455	331 bp proximal
Tssr32157	transcription start site region 32157	393 bp downstream
Tssr32158	transcription start site region 32158	364 bp downstream
Tssr32159	transcription start site region 32159	332 bp downstream
Tssr32160	transcription start site region 32160	284 bp downstream
Tssr32161	transcription start site region 32161	144 bp downstream
Tssr32162	transcription start site region 32162	40 bp upstream
Tssr32163	transcription start site region 32163	74 bp upstream
Tssr32164	transcription start site region 32164	107 bp upstream
Tssr32165	transcription start site region 32165	123 bp upstream
Tssr32166	transcription start site region 32166	459 bp upstream
Tssr32167	transcription start site region 32167	1186 bp upstream