rs224567435 SNP Detail

Summary

• ID
  rs224567435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19432946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCTCCAC CTGCTCTGAC
  TCTGGCAAAG GCTAGTTACC TCGAGTCCTT AGTTTGTCCC CCAAGACTTC TATCGTGCTG
  CCTGCTTTTC CAATTCTTGT GCCTGTTTCC TGGACTCCGG GGGATCTCAA GGTTCCCAGC
  CCACATCCTA CCAAGGTCCC TGGGTGAATC CCCAGCCCAG CTTGTCTTAC CAGCTCCTTC
  Y
  GAAACAAGTC CTTAGCCTCC AGGGTCTGAG CAGGGGATCG GATCCCAGAC CGGTCCAATT
  ATAGGACTCC CCCTGTCCCG CCCCCTCCTC AGGGCTAGGG CGGGCTGTGC CAGCCCCCTG
  TCACGAGGCG GGTTGTTCTC TCCCCCTTCA CAGCAGGGCA GAGGAAAGAG GTGGAGTTTG
  GATGCCTTGT GACCCCCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370754824	MGP_WTSI_7_20284370	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224567435					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370754824	MGP_WTSI_7_20284370	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19432946 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apoe	apolipoprotein E			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi18507	CpG island 18507			1943 bp distal
Cpgi18508	CpG island 18508			220 bp distal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57			1102 bp distal
Gm71725	predicted gene, 71725			within coordinates
Rr643241	regulatory region 643241			1885 bp distal
Rr643242	regulatory region 643242			124 bp distal
Rr643243	regulatory region 643243			725 bp distal
Rr643244	regulatory region 643244			within coordinates
Rr643245	regulatory region 643245			1309 bp proximal
Tssr2122	transcription start site region 2122			1356 bp upstream
Tssr64893	transcription start site region 64893			1937 bp downstream
Tssr64894	transcription start site region 64894			1523 bp downstream
Tssr64895	transcription start site region 64895			1444 bp downstream
Tssr64896	transcription start site region 64896			1420 bp downstream
Tssr70997	transcription start site region 70997			1986 bp upstream
Tssr70998	transcription start site region 70998			1966 bp upstream
Tssr70999	transcription start site region 70999			1910 bp upstream
Tssr71000	transcription start site region 71000			1499 bp upstream
Tssr71001	transcription start site region 71001			1433 bp upstream
Tssr71002	transcription start site region 71002			1414 bp upstream
Tssr71003	transcription start site region 71003			1386 bp upstream
Tssr71004	transcription start site region 71004			1368 bp upstream
Tssr71005	transcription start site region 71005			1023 bp upstream
Tssr71006	transcription start site region 71006			990 bp upstream
Tssr71007	transcription start site region 71007			928 bp upstream
Tssr71008	transcription start site region 71008			822 bp upstream
Tssr71009	transcription start site region 71009			760 bp upstream
Tssr71010	transcription start site region 71010			640 bp upstream
Tssr71011	transcription start site region 71011			616 bp upstream
Tssr71012	transcription start site region 71012			586 bp upstream
Tssr71013	transcription start site region 71013			24 bp downstream
Tssr71014	transcription start site region 71014			573 bp downstream
Tssr71015	transcription start site region 71015			698 bp downstream
Tssr71016	transcription start site region 71016			934 bp downstream
Tssr71017	transcription start site region 71017			1383 bp downstream
Tssr71018	transcription start site region 71018			1424 bp downstream