rs224571124 SNP Detail

Summary

• ID
  rs224571124
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25013819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAGTTAT CAATCACACA
  ATAACTATTA TTATATTATC GACCCCATGT AGTTTAACAG CCACTAGCTG CTACCTATAA
  ATAATAAACT TGTGCAGTGT GGCTAGCCAT ACTACAAATG TGAGATTTAT GCTAATTTTC
  AACTATTAAG TGTTTTAAAA AAAAAATCAC TTTTTTTTTT TTTTGAGGGA TTTGTTTATG
  W
  AACTAGCTTA CAAGCTAGCC TGCATCAGCC TCCCTTAGCC TGGAATTACA GGCAGGTACC
  AAGCTGAACG TAGGTATGAG AATTTTAATT AGTTACTCAA AGGCAATCAA ACCAATGTCA
  AAATTACCTC ACAAAAAAAC AGTCAGATGC TGTGGCACAT ACTATTCATC CCAATACTCA
  AGTAGCAGAG GCTGATCAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324298712	CHEV_13_24921705	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224571124					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25013819 () rs orientation: forward

Symbol	Name	Function Class
Acot13	acyl-CoA thioesterase 13	within coordinates
Cpgi5387	CpG island 5387	1275 bp proximal
Rr281160	regulatory region 281160	581 bp proximal
Rr403682	regulatory region 403682	1610 bp upstream
Tdp2	tyrosyl-DNA phosphodiesterase 2	1843 bp upstream
Tssr118970	transcription start site region 118970	1825 bp upstream
Tssr118971	transcription start site region 118971	1864 bp upstream
Tssr121812	transcription start site region 121812	1486 bp downstream
Tssr121813	transcription start site region 121813	1501 bp downstream
Tssr121814	transcription start site region 121814	1517 bp downstream
Tssr121815	transcription start site region 121815	1573 bp downstream
Tssr121816	transcription start site region 121816	1752 bp downstream