rs224577467 SNP Detail

Summary

• ID
  rs224577467
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155464940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGCCACG CCCCCTGCAA
  GCTGCCACGC CCTCCTTGCT CCCTGCCGTC CCTGTGTCTT GGGTGGGCAG CTGTTAAGAC
  TTGCAGTGAT GTTTAGCTCC TCTGCATGTG AACATCACAG CAAGTCTGTG CTGCTGCCTG
  CCCCCATGCT GCCTGGGTAG GGCTGGGGGA AGGGGGAGCC ATGGGACGGA GCCCTGGGGG
  T
  GGGGGGGCGG TGAAGACTTA GGTGGTGTTT GGGGTGGGGC AGGTGTCATA AGGAGCATTT
  GGGCTCCTCT GCCCAGTCCC CTCTGGTCCC TAACCACTGC GGCATGCAAT TCTGGTTCTC
  TGACCCTCCT GTGCCTCTCC CTGCTCCTCC TGTGCCTCTC TCCCTGCTCT CCCCATTCCC
  AGGAGAACCT CAACAAGCTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
ss356218355	MGP_WTSI_2_155448756	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
rs224577467					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356218355	MGP_WTSI_2_155448756	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155464940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12525	CpG island 12525			1940 bp distal
Mir499	microRNA 499			62 bp downstream
Myh7b	myosin, heavy chain 7B, cardiac muscle, beta			Intron
				Noncoding-Transcript-Variant
Rr568083	regulatory region 568083			194 bp distal
Rr568084	regulatory region 568084			1581 bp proximal
Rr568085	regulatory region 568085			1844 bp proximal