rs224584704 SNP Detail

Summary

• ID
  rs224584704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29229671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTGCGCG CCTCGGGGCG
  CTCCTGTGTG GCCCGACCCG TGTCGCCGGT GGGTGCAGTC CCTGGCTGCT GGATGGGGGC
  GGGGGGCAGC GGTTCTCCCT GCGATCCCGC CTCCTGCTTT CCCCTTAGCC CCCTGCTACT
  GGCAGGGAAC TTCAAAGCTA GAAAACCTGC GGGTTTCCGA CAGCCTAGGA AGGAGTGGCT
  R
  GCTGTTGATA AATGCATGCA TCCCCTTGTG CCTTAGAACC CGACCCCCCC TCTTTCTTAT
  TCTTCTGTAC ATTTTTCTAG TCATCTAAAC AGCGCAGAAA AAAAAAAAGA GAGCATCTAT
  TGGCCCTGGG TTTTTGAGTT AGTGACTTGC TGCTTCTGTT TTTAGGTTCC TGAAGCAGGC
  GACGGGAACA AGATGTGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss402211706	MGP_WTSI_19_29326761	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs224584704					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402211706	MGP_WTSI_19_29326761	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29229671 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	within coordinates
Gm41829	predicted gene, 41829	within coordinates
Gm59364	predicted gene, 59364	770 bp upstream
Jak2	Janus kinase 2	within coordinates
Rr405910	regulatory region 405910	1575 bp upstream
Rr546087	regulatory region 546087	944 bp distal
Rr546088	regulatory region 546088	433 bp distal
Rr546089	regulatory region 546089	648 bp distal
Rr546090	regulatory region 546090	within coordinates
Rr546091	regulatory region 546091	181 bp proximal
Rr546092	regulatory region 546092	1699 bp proximal
Tssr155779	transcription start site region 155779	1633 bp downstream
Tssr155780	transcription start site region 155780	606 bp downstream
Tssr155781	transcription start site region 155781	417 bp downstream
Tssr155782	transcription start site region 155782	404 bp downstream
Tssr155783	transcription start site region 155783	370 bp downstream
Tssr155784	transcription start site region 155784	29 bp upstream
Tssr155785	transcription start site region 155785	158 bp upstream
Tssr155786	transcription start site region 155786	183 bp upstream
Tssr155787	transcription start site region 155787	283 bp upstream
Tssr158749	transcription start site region 158749	166 bp upstream