rs224588342 SNP Detail

Summary

• ID
  rs224588342
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82325839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGTCCCC CGACGGACTG
  GAGCCGGAGG CGGCAGCGGA GAGCCAGCAG GTTGAGCTCT ACTATACGCT GCACGCCCCC
  GATGCGTCGG GCGGCTGCGG GAGCGCGCGG CGCGGGCCCG GGCCCGGGCC CGGAGCGGCT
  GCGCGCGCCG AGAGCCCCAC GCAGCACCCA CTGCTGCGCA TCGGCAGCAT CAGTCTGTTC
  H
  GGCCGCCGCC GCGCAGGGCC GTGCAGGAGC ACAGGCTAGA CAGCAACCTG ATGATCCGCC
  TGCCCGACCG GCCACTCAGG CCTGGAGAGG TACTCAGTAT CCTCCTCTAC CTGGCACCTA
  ACTCCTCCTC AGCTGCCAGC CCCAGCGTGG AGCACTTCAC ACTTAGGTAA GGGGCCTGAG
  ATGGGAGGGG CACCCCTGCT                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss384049169	MGP_WTSI_11_82248515	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs224588342					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384049169	MGP_WTSI_11_82248515	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82325839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3396	CpG island 3396	within coordinates
D11Pas12	DNA segment, Chr 11, Pasteur Institute 12	557 bp distal
D11Pas13	DNA segment, Chr 11, Pasteur Institute 13	1516 bp proximal
D11Pas23	DNA segment, Chr 11, Pasteur Institute 23	1891 bp proximal
D11Pas49	DNA segment, Chr 11, Pasteur Institute 49	1200 bp proximal
Tmem132e	transmembrane protein 132E	within coordinates
Tssr103577	transcription start site region 103577	180 bp downstream