rs224595028 SNP Detail

Summary

• ID
  rs224595028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34552279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGATTTTT TTTCCCCCTC
  TGCATTTGGA AATCTTTGTG TGCCTTCGGC ACAATCTTAG GGTAAACTTT AATGGACTTG
  AAGTGTAAGT CTGTTTCTTT TGTGTGTGGC ATGCAAGAGT GTGTGAGCCT GTGTGTGTAA
  GCCCTTAGTG ATATCATCCT TAAAGCCTTT GCTTAGCTTA AATTTTTTTT TTCTCAGTAA
  Y
  TCATTTTAAA AAGATGGGAA CTATAGAGTT CTGTATTTGG TAACATCTAT ATGAAATTGA
  CTGTACCATG TGTGTTTTTT TAAATGTCAC ATTTAAATAT TCATACCCAA ATCCATGGAG
  AACCTCAGTT ACCTAGTCTG GCTCTTAAAT TTTTGATATA ACGTAGCCAA AAGCTGTTTT
  ATGAGTTGCA GTCACTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361140657	MGP_WTSI_4_34499528	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224595028					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361140657	MGP_WTSI_4_34499528	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34552279 () rs orientation: forward

Symbol	Name	Function Class
Akirin2	akirin 2	within coordinates
Cpgi14119	CpG island 14119	572 bp distal
Gm68522	predicted gene, 68522	1458 bp downstream
Gm70378	predicted gene, 70378	1722 bp upstream
Rr100806	regulatory region 100806	within coordinates
Rr367598	regulatory region 367598	1649 bp downstream
Tssr36766	transcription start site region 36766	1617 bp downstream
Tssr36767	transcription start site region 36767	1591 bp downstream
Tssr36768	transcription start site region 36768	1363 bp downstream
Tssr36769	transcription start site region 36769	1350 bp downstream
Tssr36770	transcription start site region 36770	1334 bp downstream
Tssr41190	transcription start site region 41190	832 bp upstream