rs224597678 SNP Detail

Summary

• ID
  rs224597678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68911705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGTGTCA CTTACACAAA
  ATAGTTCAAA AATCATTGTT ATTCATAAAT GGACTACAAG GTTAACTCAA TAATCCCGGT
  TTCCTCGCTT TACCTGTAAA CTCCACATCC CAAGATCAAC ACCCTGGTGG CTGGAAGAAG
  ATGGAAAATA ACTGATGCTC CCGCAAAGCT CATCCCATCT AACCAAGAGA AGCTAGGTCT
  Y
  AATGACCGCT ACCGCTTCCA AGCCCTTTCT TCAAAGGCTC TGGAGATGAA GAAATTTACC
  TCAAGTTCCA GGAAAGCGGT GGCGACTGCT CTCAGAGCTC GAACTAGTTA CCAAATAGCC
  TCCCGACCTT TCCGTCACCA TAGTGATTTC TAAGCGCTGC GAGCGTTTCC CCCTGCCATG
  TTCCCGCGAT ACTTGCTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358313290	MGP_WTSI_3_68808294	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224597678					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358313290	MGP_WTSI_3_68808294	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68911705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13255	CpG island 13255	78 bp proximal
Ift80	intraflagellar transport 80	within coordinates
Rr397713	regulatory region 397713	116 bp upstream
Rr578107	regulatory region 578107	1398 bp distal
Rr578108	regulatory region 578108	within coordinates
Rr578109	regulatory region 578109	161 bp proximal
Rr578110	regulatory region 578110	630 bp proximal
Smc4	structural maintenance of chromosomes 4	366 bp upstream
Tssr901	transcription start site region 901	40 bp downstream
Tssr29506	transcription start site region 29506	339 bp upstream
Tssr29507	transcription start site region 29507	597 bp upstream
Tssr29508	transcription start site region 29508	746 bp upstream
Tssr29509	transcription start site region 29509	927 bp upstream
Tssr29510	transcription start site region 29510	965 bp upstream
Tssr29511	transcription start site region 29511	1068 bp upstream
Tssr29512	transcription start site region 29512	1361 bp upstream
Tssr29513	transcription start site region 29513	1555 bp upstream
Tssr29514	transcription start site region 29514	1660 bp upstream
Tssr33516	transcription start site region 33516	within coordinates
Tssr33517	transcription start site region 33517	80 bp downstream
Tssr33518	transcription start site region 33518	103 bp downstream
Tssr33519	transcription start site region 33519	131 bp downstream
Tssr33520	transcription start site region 33520	181 bp downstream
Tssr33521	transcription start site region 33521	193 bp downstream