rs224598112 SNP Detail

Summary

• ID
  rs224598112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134421204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCCGATC TCATTAGTAC
  AGTCTCTCTC TACGCAGAAA TATGCTTTAG TCGCTGGTTT ACAAACCATT CTTAAGTTTG
  ATCCCTTTTT TTGTTTGTTT GGTTTTTGTT TTTGTTTTTT TCAAGACAGG GTTTCTCTGT
  GTAGCCCTGG CTGTCCTGGA ACTAACTCTG TAGACCAGGC TGGCCTCGAA CTCAGAAATT
  Y
  GCCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGCTGTG CCACCATTGC CCAGCTTTAA
  ATTTGATCCT TTTCTAGTGT ACCCTGTGTC TAAAATCTTT CATTCCTGAC AACCAAATGG
  TTAATTAAAA TGATACCTAC GGGGCCTGGA GAGATGAGTC ATGGTTGAGT GCCAGCTGAT
  GACTGTTCTT TCAGAGGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss351519789	MGP_WTSI_1_136390043	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs224598112					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351519789	MGP_WTSI_1_136390043	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134421204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	1030 bp proximal
Rabif	RAB interacting factor	1173 bp upstream
Rr396314	regulatory region 396314	998 bp upstream
Rr418926	regulatory region 418926	1727 bp distal
Rr418927	regulatory region 418927	264 bp proximal
Rr418928	regulatory region 418928	692 bp proximal
Rr418929	regulatory region 418929	1264 bp proximal
Rr418930	regulatory region 418930	1705 bp proximal
Tssr8899	transcription start site region 8899	1162 bp upstream
Tssr8900	transcription start site region 8900	1270 bp upstream
Tssr8901	transcription start site region 8901	1520 bp upstream