rs224600731 SNP Detail

Summary

• ID
  rs224600731
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156080129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCCCTG AGACAATACT
  TCTCTGTGTA GCCCTGGTTA TCACCCAAGT GCTGGGATTA AAGGTTGATA GTGAGAATTT
  GGAATTTTGG TTGCTTTAAA AATCACAAAT ATTATAAGGG TGTGCTTCCA TTTTAATCCC
  AGGCATAAAG ATGTGGGGCT GCTCTGGACT CTCCATGGCA GCTGACTGTG ATTTGCCTTG
  Y
  GCTGTAGCAG AGGCGTGGTT TTGCCAGCTA TAGAAAATGT TCTGCGATTG ATTGACATTT
  GGAATTCTGG GAACTTTTCA GAGGATATAT AAATGCTAGG GCACCTAGAG GTGTGATTGG
  TGGGTGTTCA GGGAGGTTGG TTATGGTTTG CTAGTAGTCA TTCTCAAAGA AGAAACAAGA
  GAAAAAAATT AGATGCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444418	CHEV_4_155369781	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224600731					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156080129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15496	CpG island 15496	1835 bp distal
Rr377473	regulatory region 377473	1299 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr40753	transcription start site region 40753	667 bp upstream